A review of defect engineering, ion implantation, and nanofabrication using the helium ion microscope

• Frances I. Allen

Beilstein J. Nanotechnol. 2021, 12, 633–664, doi:10.3762/bjnano.12.52

Bio-imaging with the helium-ion microscope: A review

• Matthias Schmidt,
• James M. Byrne and
• Ilari J. Maasilta

Beilstein J. Nanotechnol. 2021, 12, 1–23, doi:10.3762/bjnano.12.1

False positives and false negatives measure less than 0.001% in labeling ssDNA with osmium tetroxide 2,2’-bipyridine

• Anastassia Kanavarioti

Beilstein J. Nanotechnol. 2016, 7, 1434–1446, doi:10.3762/bjnano.7.135

• surrogate for nanopore-based DNA sequencing due to OsBp’s “perfect” label attributes. Osmylated deoxyoligos translocate unassisted and measurably slow via sub-2 nm SiN solid-state nanopores, as well as via the alpha-hemolysin (α-HL) pore. Both nanopores discriminate clearly between osmylated and intact

• properties of the degradation products via nanopore translocation can be evaluated to assure base calling quality in a DNA sequencing effort. Keywords: α-hemolysin; capillary electrophoresis; DNA sequencing; high-performance liquid chromatography; nanopores; osmium tetroxide bipyridine; osmylated oligos

• academia, government, and industry pushed DNA sequencing to next-generation technologies [3] that flourished exponentially due to technological advancements in parallelization, miniaturization, and bioinformatics. DNA sequencing was and still is an extension of the Sanger sequencing-by-synthesis (SBS

Reconstitution of the membrane protein OmpF into biomimetic block copolymer–phospholipid hybrid membranes

• Matthias Bieligmeyer,
• Franjo Artukovic,
• Stephan Nussberger,
• Thomas Hirth,
• Thomas Schiestel and
• Michaela Müller

Beilstein J. Nanotechnol. 2016, 7, 881–892, doi:10.3762/bjnano.7.80

• lipid membranes with high fidelity and selectivity. In the field of biotechnology, they are particularly attractive for single-molecule DNA sequencing [1][2][3][4][5] and stochastic sensing of ions and macromolecules [6][7][8][9][10]. The well-defined dimensions of the protein pores furthermore offer a

Single pyrimidine discrimination during voltage-driven translocation of osmylated oligodeoxynucleotides via the α-hemolysin nanopore

• Yun Ding and
• Anastassia Kanavarioti

Beilstein J. Nanotechnol. 2016, 7, 91–101, doi:10.3762/bjnano.7.11

• the pore. With the assistance of a processing enzyme to slow down translocation, nanopore-based DNA sequencing is now a commercially available platform. However, accurate base calling is challenging because α-HL senses a sequence, and not a single nucleotide. Osmylated DNA was recently proposed as a

• above detection limits, may be further optimized, and clear the way for nanopore-based sequencing using osmylated DNA. Keywords: DNA sequencing; α-hemolysin; ion-channel measurements; nanopore; osmium tetroxide bipyridine; osmylated oligos; osmylation; single-stranded DNA (ssDNA); Introduction

• thin layers of inorganic materials [6][7][8][9] has led to exploration of both natural and synthetic pores for a number of applications [10][11]. The concept, reintroduced independently by David Deamer and George Church in the context of DNA sequencing, is based on applying a potential across an open

Functionalization of α-synuclein fibrils

• Simona Povilonienė,
• Vida Časaitė,
• Virginijus Bukauskas,
• Arūnas Šetkus,
• Juozas Staniulis and
• Rolandas Meškys

Beilstein J. Nanotechnol. 2015, 6, 124–133, doi:10.3762/bjnano.6.12

• screening and restriction analysis. The presence of the desired mutation was verified by DNA sequencing (Sequencing Center, Institute of Biotechnlogy, Vilnius University). Expression and purification of mutant α-SynC141 Wild-type α-Syn and α-SynC141 mutant were purified as described by Der-Sarkissian et al

Synthesis of hydrophobic photoluminescent carbon nanodots by using L-tyrosine and citric acid through a thermal oxidation route

• Venkatesh Gude

Beilstein J. Nanotechnol. 2014, 5, 1513–1522, doi:10.3762/bjnano.5.164

• : composite materials; fluorescence quenching; hydrophobic; luminescence; upconversion; Introduction The synthesis of fluorescent functional materials raised significant interest in order to understand biological processes such as DNA sequencing, detection of DNA-hybridization, protein sensing, single

Controlled deposition and combing of DNA across lithographically defined patterns on silicon

• Zeinab Esmail Nazari and
• Leonid Gurevich

Beilstein J. Nanotechnol. 2013, 4, 72–76, doi:10.3762/bjnano.4.8

• nanoelectronics [7][8][15][16], many biomedical and genomic studies employ molecular combing as an effective tool for the generation of highly ordered alignments of DNA for various investigations, including gene mapping, DNA sequencing, and analysis [17][18]. Most combing methods reported so far involve

Distinction of nucleobases – a tip-enhanced Raman approach

• Regina Treffer,
• Xiumei Lin,
• Elena Bailo,
• Tanja Deckert-Gaudig and
• Volker Deckert

Beilstein J. Nanotechnol. 2011, 2, 628–637, doi:10.3762/bjnano.2.66

• , Jena University, Helmholtzweg 4, D-07743 Jena, Germany 10.3762/bjnano.2.66 Abstract The development of novel DNA sequencing methods is one of the ongoing challenges in various fields of research seeking to address the demand for sequence information. However, many of these techniques rely on some kind